PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00010.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 481aa    MW: 53575.1 Da    PI: 5.0191
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00010.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.8e-36101022103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl k+ye+++d++++++isw+e g++fvv+++ efak++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk
  Sme2.5_00010.1_g00004.1  10 FLLKTYELVDDAANNDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFK 86 
                              9****************************************************************999.........********* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkkse 103
                              +g+kell+ i+r+k++
  Sme2.5_00010.1_g00004.1  87 RGQKELLTAIHRRKTT 102
                              *************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-37393IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.3E-33699IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-58699IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-301099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-191033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-194860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-196173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.238.108.0E-46309451IPR011992EF-hand domain pair
SuperFamilySSF474732.46E-41310451IPR011992EF-hand domain pair
PROSITE profilePS5022216.076319354IPR002048EF-hand domain
PfamPF134997.1E-16322384IPR002048EF-hand domain
CDDcd000514.66E-23323385No hitNo description
SMARTSM000541.7E-7323351IPR002048EF-hand domain
PROSITE patternPS000180332344IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS5022214.876355390IPR002048EF-hand domain
SMARTSM000549.3E-8359387IPR002048EF-hand domain
PROSITE patternPS000180368380IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS5022213.425392427IPR002048EF-hand domain
PfamPF134993.7E-8395450IPR002048EF-hand domain
CDDcd000516.08E-11396451No hitNo description
SMARTSM000540.071396424IPR002048EF-hand domain
PROSITE patternPS000180405417IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS502225.643428451IPR002048EF-hand domain
SMARTSM0005436432458IPR002048EF-hand domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSQRTAPAPF LLKTYELVDD AANNDVISWN EIGTTFVVWK TAEFAKDLLP KYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANENFKRGQK ELLTAIHRRK TTTSTPAGGK SVAAGTSASP  120
DNSGDDIGSS STSSPDSKNP GSVETPGKLS QFMDLSDENE KLKKDNQMLS SELVRAKKQC  180
DELVDFLSQY VKVAPDMINR IMSQGTPSGS SLEDLVKEAG VVKDLEKQVS CNDDDHEDDD  240
EKGDTLKLFG VLLKEKKKKR GPDENIDSCG ARGKLMKTVE YNGPWMKMSS VAGESSKASV  300
SRKFSRRETR QRHPGLTQQK RKEIKEAFEL FDTDGSGTID ARELNVAMRA LGFEMTEEHV  360
EQMIADVDKD GSGAIDFDEF VHMMTAKIGE RDTKEDLAKA FNIIDQDKTG KISATDIQKI  420
AKELGENFTA REIQEMIEAA DRDCNGKVDV DFTLSDSTCG IPLGMSSSLF TDRGSWVFLY  480
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kf9_A1e-553154491135Caltractin
3kf9_C1e-553154491135Caltractin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX553470.0X55347.1 Tomato mRNA for heat stress transcription factor HSF24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001308379.10.0heat shock factor protein HSF24
SwissprotP223350.0HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLK4BCN10.0K4BCN1_SOLLC; Uncharacterized protein
TrEMBLA0A0V0I9420.0A0A0V0I942_SOLCH; Putative heat shock factor protein HSF24-like
STRINGSolyc02g090820.2.11e-180(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99912127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.16e-78heat shock factor 4